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Comment: fail to use addPerROIQC in Rmd
by
joseph.joonsang
•
0
Yes, I did. Here is my code.
data.path <- "~/GeoMx_best_practice/data/"
filepath <- paste(data.path, "Joon_QC_NPC_4_…
Comment: fail to use addPerROIQC in Rmd
by
shepherl
4.1k
Just covering all bases. You defined spe earlier in the R markdown that is not shown?
Comment: Open Sesame: in what genes are my differentially methylated probes!!
by
alyssa-daniel
•
0
@zhouwanding I have a question regarding DML analysis. I understand the Est_ output is describing the difference in methylation between the…
Comment: DESeq2 dispersion estimates fitting drastically different based on explanatory v
by
Sam
•
0
Here is the explanatory variables![enter image description here][1] uses if that helps address the problem as well
[1]: /media/images/…
Comment: Merge Replicates vs Mixed Model
by
abadgerw
•
0
Thanks, @gabrielhoffman
My understanding is that both options would still be mixed models:
Even with technical replicates (3 wells per d…
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